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ASM252897v1

Organism name:
Enterobacter cloacae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DL4.3
BioSample:
SAMN07167863
BioProject:
PRJNA388135
Submitter:
National Institute of Science Education and Research
Date:
2017/10/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002528975.1 (latest)
RefSeq assembly accession:
GCF_002528975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NMPX01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
480.43x
Sequencing technology:
IonTorrent

IDs: 1315781 [UID] 5293578 [GenBank] 5356468 [RefSeq]

See Genome Information for Enterobacter cloacae

There are 1008 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/12/2017 12:40:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,784
CDS (total)::4,671
Genes (coding)::4,383
CDS (coding)::4,383
Genes (RNA)::113
rRNAs::14, 5, 21 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::13, 5, 21 (5S, 16S, 23S)
tRNAs::66
ncRNAs::7
Pseudo Genes (total)::288
Pseudo Genes (ambiguous residues)::0 of 288
Pseudo Genes (frameshifted)::218 of 288
Pseudo Genes (incomplete)::51 of 288
Pseudo Genes (internal stop)::46 of 288
Pseudo Genes (multiple problems)::25 of 288
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,820,048
Total ungapped length4,820,048
Number of contigs145
Contig N50122,602
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)145

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,820,0481454,820,048122,60200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacaeEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025565.1Enterobacter cloacae subsp. cloacae ATCC 13047type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025565.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8191.2378.54
Best-match type98.8191.2378.54

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna