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ASM238638v1

Organism name:
Citrobacter werkmanii (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Culture-collection: FDA:FDAARGOS_364
Infraspecific name:
Strain: FDAARGOS_364
BioSample:
SAMN07312408
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2017/09/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002386385.1 (latest)
RefSeq assembly accession:
GCF_002386385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 2.3.0, HGAP v. 3
Genome coverage:
500.567x
Sequencing technology:
PacBio; Illumina

IDs: 1241691 [UID] 5123568 [GenBank] 5147438 [RefSeq]

See Genome Information for Citrobacter werkmanii

There are 79 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/18/2023 03:01:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,684
CDSs (total)::4,566
Genes (coding)::4,478
CDSs (with protein)::4,478
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::8
Pseudo Genes (total)::88
CDSs (without protein)::88
Pseudo Genes (ambiguous residues)::0 of 88
Pseudo Genes (frameshifted)::33 of 88
Pseudo Genes (incomplete)::56 of 88
Pseudo Genes (internal stop)::18 of 88
Pseudo Genes (multiple problems)::18 of 88
Pseudo Genes (short protein)::1 of 88
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,885,099
Total ungapped length4,885,099
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002386395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023504.1=NZ_CP023504.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,885,099

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter werkmaniiCitrobacter werkmanii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020341495.1Citrobacter werkmaniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004684345.1Citrobacter tructaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type86.9377.2375.25
Best-match type91.1979.4778.48

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna