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Source database (GenBank or RefSeq) File type

ASM235589v1

Organism name:: Streptococcus sp. NPS 308 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: NPS 308
BioSample:: SAMD00061134
BioProject:: PRJDB5166
Submitter:: Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences
Date:: 2016/10/17
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002355895.1 (latest)
RefSeq assembly accession:: GCF_002355895.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v.3
Genome coverage:: 314X
Sequencing technology:: PacBio RS II

IDs: 1226351 [UID] 5088768 [GenBank] 5108448 [RefSeq]

See Genome Information for Streptococcus sp. NPS 308

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002355895.1	=	GCF_002355895.1	ASM235589v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated using prokka 1.11 from http://www.vicbioinformatics.com.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 02:16:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,908
CDSs (total)::1,831
Genes (coding)::1,796
CDSs (with protein)::1,796
Genes (RNA)::77
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::62
ncRNAs::3
Pseudo Genes (total)::35
CDSs (without protein)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::15 of 35
Pseudo Genes (incomplete)::22 of 35
Pseudo Genes (internal stop)::8 of 35
Pseudo Genes (multiple problems)::9 of 35
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,924,728
Total ungapped length	1,924,728
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	91.73	80.95	80.67

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ASM235589v1

See Genome Information for Streptococcus sp. NPS 308

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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