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ASM235521v1

Organism name:
Streptococcus troglodytae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TKU 31
BioSample:
SAMD00017730
BioProject:
PRJDB2913
Submitter:
Tsurumi University, School of Dental Medicine
Date:
2015/02/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002355215.1 (latest)
RefSeq assembly accession:
GCF_002355215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 6.1
Genome coverage:
20x
Sequencing technology:
454

IDs: 1226011 [UID] 5088088 [GenBank] 8361228 [RefSeq]

See Genome Information for Streptococcus troglodytae

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2020 02:23:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,014
CDSs (total)::1,930
Genes (coding)::1,572
CDSs (with protein)::1,572
Genes (RNA)::84
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::65
ncRNAs::4
Pseudo Genes (total)::358
CDSs (without protein)::358
Pseudo Genes (ambiguous residues)::0 of 358
Pseudo Genes (frameshifted)::319 of 358
Pseudo Genes (incomplete)::38 of 358
Pseudo Genes (internal stop)::26 of 358
Pseudo Genes (multiple problems)::24 of 358
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,097,874
Total ungapped length2,097,874
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002355225.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP014612.1=NZ_AP014612.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,097,874

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus troglodytaeStreptococcus troglodytae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006739205.1Streptococcus mutanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.0283.3686.63

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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