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ASM231157v1

Organism name:
Vreelandella titanicae (g-proteobacteria)
Taxonomy check:
OK
Isolate:
UBA1129
BioSample:
SAMN06451852
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002311575.1 (latest)
RefSeq assembly accession:
GCF_002311575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DCAQ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
388.46x
Sequencing technology:
Illumina

IDs: 1202481 [UID] 5027628 [GenBank] 42107838 [RefSeq]

See Genome Information for Vreelandella titanicae

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,216,140
Total ungapped length5,210,487
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50143,952
Scaffold L5014
Number of contigs98
Contig N50128,332
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,216,140575,210,487143,952410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vreelandella titanicaeVreelandella titanicae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000336575.1Halomonas titanicae BH1type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000336575.1Vreelandella titanicaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3784.9882.93
Best-match type97.3784.9882.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna