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Lprolificans_pilon

Organism name:
Lomentospora prolificans (ascomycete fungi)
Infraspecific name:
Strain: JHH-5317
BioSample:
SAMN07322686
BioProject:
PRJNA392827
Submitter:
Johns Hopkins University
Date:
2017/09/15
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002276285.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NLAX01
Assembly method:
MaSuRCA v. 3.2.2_RC3; Megahit v. MAY-2017
Expected final version:
no
Genome coverage:
260.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore

IDs: 1198941 [UID] 5016148 [GenBank]

See Genome Information for Lomentospora prolificans

History (Show revision history)

Comment

The VEuPathDB Bioinformatics Resource Center (www.veupathdb.org) may also have contributed to the annotation of this genome. Annotation and related data can be viewed and updated at http://veupathdb.org and inquiries can be sent to help@veupathdb.org.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::AUG-2017
Annotation Method::MAKER v. 3.0beta; Infernal v. 1.1.2
Annotation Provider::Center for Computational Biology, JHU
Annotation Version::Release 1.0
##Genome-Annotation-Data-END##

Global statistics

Total sequence length37,627,092
Total ungapped length37,627,092
Number of contigs1,625
Contig N502,796,173
Contig L504
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,625

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced37,603,1051,62437,603,1052,796,17300
MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT23,987123,98723,98700
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