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ASM224003v1

Organism name:
Legionella clemsonensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CDC-D5610
BioSample:
SAMN05254214
BioProject:
PRJNA326348
Submitter:
Clemson University
Date:
2017/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002240035.1 (latest)
RefSeq assembly accession:
GCF_002240035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Prokka v. v1.11
Genome coverage:
133.73
Sequencing technology:
PacBio

IDs: 1164441 [UID] 4899588 [GenBank] 4901408 [RefSeq]

See Genome Information for Legionella clemsonensis

History (Show revision history)

Comment

rRNA annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/21/2021 02:01:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,941
CDSs (total)::2,884
Genes (coding)::2,842
CDSs (with protein)::2,842
Genes (RNA)::57
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::29 of 42
Pseudo Genes (incomplete)::20 of 42
Pseudo Genes (internal stop)::6 of 42
Pseudo Genes (multiple problems)::12 of 42
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,272,100
Total ungapped length3,272,100
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002240045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016397.1=NZ_CP016397.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,272,100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella clemsonensisLegionella clemsonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001467745.1Legionella jamestowniensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.0250.7949.76

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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