U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM224003v1

Organism name:
Legionella clemsonensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CDC-D5610
BioSample:
SAMN05254214
BioProject:
PRJNA326348
Submitter:
Clemson University
Date:
2017/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002240035.1 (latest)
RefSeq assembly accession:
GCF_002240035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Prokka v. v1.11
Genome coverage:
133.73
Sequencing technology:
PacBio

IDs: 1164441 [UID] 4899588 [GenBank] 4901408 [RefSeq]

See Genome Information for Legionella clemsonensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/17/2024 06:49:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,952
CDSs (total)::2,895
Genes (coding)::2,859
CDSs (with protein)::2,859
Genes (RNA)::57
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::27 of 36
Pseudo Genes (incomplete)::14 of 36
Pseudo Genes (internal stop)::5 of 36
Pseudo Genes (multiple problems)::10 of 36
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,272,100
Total ungapped length3,272,100
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002240045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016397.1=NZ_CP016397.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,272,100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella clemsonensisLegionella clemsonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900640205.1Legionella jamestowniensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.0251.1449.01

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected