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TDr96_F1_Pseudo_Chromosome_v1.0

Organism name:
Dioscorea cayenensis subsp. rotundata (Guinea yam)
Infraspecific name:
Cultivar: TDr96_F1
BioSample:
SAMD00039982
BioProject:
PRJDB3383
Submitter:
Iwate Biotechnology Research Center
Date:
2017/07/28
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002240015.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
BDMI01
Assembly method:
Allpaths-LG v. r49856, SSPACE Premium v. 2.3
Genome coverage:
100x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1185331 [UID] 4972598 [GenBank]

See Genome Information for Dioscorea cayenensis

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length456,674,974
Total ungapped length406,105,939
Gaps between scaffolds0
Number of scaffolds21
Scaffold N5025,272,979
Scaffold L508
Number of contigs34,429
Contig N5022,084
Contig L505,332
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)21

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_002240025.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1BDMI01000001.1n/an/a
Chromosome 2BDMI01000002.1n/an/a
Chromosome 3BDMI01000003.1n/an/a
Chromosome 4BDMI01000004.1n/an/a
Chromosome 5BDMI01000005.1n/an/a
Chromosome 6BDMI01000006.1n/an/a
Chromosome 7BDMI01000007.1n/an/a
Chromosome 8BDMI01000008.1n/an/a
Chromosome 9BDMI01000009.1n/an/a
Chromosome 10BDMI01000010.1n/an/a
Chromosome 11BDMI01000011.1n/an/a
Chromosome 12BDMI01000012.1n/an/a
Chromosome 13BDMI01000013.1n/an/a
Chromosome 14BDMI01000014.1n/an/a
Chromosome 15BDMI01000015.1n/an/a
Chromosome 16BDMI01000016.1n/an/a
Chromosome 17BDMI01000017.1n/an/a
Chromosome 18BDMI01000018.1n/an/a
Chromosome 19BDMI01000019.1n/an/a
Chromosome 20BDMI01000020.1n/an/a
Chromosome 21BDMI01000021.1n/an/a

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All456,674,97421406,105,93925,272,97934,4110
Chromosome 131,431,123126,574,48731,431,1233,1960
Chromosome 233,969,142130,010,58933,969,1422,7390
Chromosome 319,547,260116,988,56119,547,2601,4930
Chromosome 427,749,968124,921,03127,749,9682,0100
Chromosome 532,871,075129,814,89932,871,0752,3170
Chromosome 632,866,201129,500,68232,866,2012,3290
Chromosome 718,053,115115,957,97818,053,1151,3660
Chromosome 828,021,425125,078,72528,021,4251,8580
Chromosome 923,324,680119,899,72923,324,6802,1700
Chromosome 1017,904,088115,922,82717,904,0881,3760
Chromosome 1117,195,437115,472,15117,195,4371,1940
Chromosome 1225,272,979122,699,05225,272,9791,8230
Chromosome 1329,719,729125,872,81829,719,7292,5090
Chromosome 1415,713,101114,315,47015,713,1011,0500
Chromosome 1510,474,55719,428,51510,474,5577840
Chromosome 1623,371,965120,992,47123,371,9651,6840
Chromosome 1720,585,887118,563,39920,585,8871,4410
Chromosome 1822,795,539120,508,18222,795,5391,4320
Chromosome 199,927,36419,150,3699,927,3646060
Chromosome 2010,677,19819,712,44710,677,1987100
Chromosome 215,203,14114,721,5575,203,1413240