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Source database (GenBank or RefSeq) File type

ASM221472v1

Anomalous assembly.

Organism name:

Bacillus cereus (firmicutes)

Taxonomy check:

Failed

Infraspecific name:

Strain: M3

BioSample:

SAMN05300199

BioProject:

PRJNA326992

Submitter:

Korea Food Research Institute

Date:

2017/07/05

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_002214725.1 (latest)

RefSeq assembly accession:

GCF_002214725.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

HGAP v. 3.0

Genome coverage:

162x

Sequencing technology:

PacBio

IDs: 1150871 [UID] 4674538 [GenBank] 4676068 [RefSeq]

See Genome Information for Bacillus cereus

Pathogen Detection Resources

There are 2514 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002214725.1	=	GCF_002214725.1	ASM221472v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria Bacillus cereus M3 is available from Division of Gut Microbiome in Korea Food Research Institute. Maintenance is in ... charge of Dr. Young-Do Nam who is the leader of that division.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::06/30/2016 12:19:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,593
CDS (total)::5,440
Genes (coding)::5,319
CDS (coding)::5,319
Genes (RNA)::153
rRNAs::14, 14, 14 (5S, 16S, 23S)
complete rRNAs::14, 14, 14 (5S, 16S, 23S)
tRNAs::106
ncRNAs::5
Pseudo Genes (total)::121
Pseudo Genes (ambiguous residues)::0 of 121
Pseudo Genes (frameshifted)::51 of 121
Pseudo Genes (incomplete)::51 of 121
Pseudo Genes (internal stop)::39 of 121
Pseudo Genes (multiple problems)::20 of 121
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,448,353
Total ungapped length	5,448,353
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP016316.1	=	NZ_CP016316.1
Plasmid pBCM301	CP016317.1	=	NZ_CP016317.1

Molecule	Total Length
All	5,448,353
Chromosome	5,218,997
Plasmid pBCM301	229,356

	ANI	Query coverage	Subject coverage
Declared type	91.87	78.77	79.02
Best-match type	98.39	85.18	85.68

Assembly

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Contig N50

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ASM221472v1

See Genome Information for Bacillus cereus

Pathogen Detection Resources

There are 2514 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result