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ASM221174v1

Organism name:
Kluyvera genomosp. 3 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YDC799
BioSample:
SAMN07267279
BioProject:
PRJNA391375
Submitter:
University of Pittsburgh
Date:
2017/06/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_002211745.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
94.0x
Sequencing technology:
PacBio

IDs: 1142291 [UID] 4640498 [GenBank]

See Genome Information for Kluyvera genomosp. 3

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/22/2017 12:53:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,006
CDS (total)::4,889
Genes (coding)::2,237
CDS (coding)::2,237
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::5
Pseudo Genes (total)::2,652
Pseudo Genes (ambiguous residues)::0 of 2,652
Pseudo Genes (frameshifted)::2,572 of 2,652
Pseudo Genes (incomplete)::133 of 2,652
Pseudo Genes (internal stop)::50 of 2,652
Pseudo Genes (multiple problems)::97 of 2,652
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,006,140
Total ungapped length5,006,140
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_002211755.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022114.1n/an/a

Assembly statistics

MoleculeTotal
Length
Chromosome 5,006,140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Kluyvera genomosp. 3Kluyvera genomosp. 3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001654985.1Kluyvera georgianatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.5981.2080.20

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna