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Source database (GenBank or RefSeq) File type

ASM219706v1

Organism name:: Sinorhizobium meliloti (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: USDA1106
BioSample:: SAMN07175168
BioProject:: PRJNA388336
Submitter:: University of Minnesota
Date:: 2017/06/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002197065.1 (latest)
RefSeq assembly accession:: GCF_002197065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: PacBio v. HGAP3
Expected final version:: no
Genome coverage:: 35.5x
Sequencing technology:: PacBio

IDs: 1134361 [UID] 4607328 [GenBank] 4619798 [RefSeq]

See Genome Information for Sinorhizobium meliloti

Pathogen Detection Resources

There are 468 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002197065.1	=	GCF_002197065.1	ASM219706v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Michael Sadowsky, 1479 Gortner Ave, 149 Gortner Labs, St. Paul, MN 55108.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002197065.1-RS_2024_03_19
Annotation Date::03/19/2024 05:43:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,374
CDSs (total)::6,306
Genes (coding)::6,027
CDSs (with protein)::6,027
Genes (RNA)::68
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::279
CDSs (without protein)::279
Pseudo Genes (ambiguous residues)::0 of 279
Pseudo Genes (frameshifted)::172 of 279
Pseudo Genes (incomplete)::165 of 279
Pseudo Genes (internal stop)::42 of 279
Pseudo Genes (multiple problems)::88 of 279
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,716,226
Total ungapped length	6,716,226
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP021797.1	=	NZ_CP021797.1
Plasmid psymA	CP021798.1	=	NZ_CP021798.1
Plasmid psymB	CP021799.1	=	NZ_CP021799.1

Molecule	Total Length
All	6,716,226
Chromosome	3,671,869
Plasmid psymA	1,363,628
Plasmid psymB	1,680,729

	ANI	Query coverage	Subject coverage
Declared type	99.33	90.95	83.18
Best-match type	99.33	90.95	83.18

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ASM219706v1

See Genome Information for Sinorhizobium meliloti

Pathogen Detection Resources

There are 468 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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