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ASM218584v2

Organism name:
Enterobacter hormaechei subsp. xiangfangensis (CDC Enteric Group 75)
Taxonomy check:
OK
Infraspecific name:
Strain: CRK0041
BioSample:
SAMN06812633
BioProject:
PRJNA339843
Submitter:
JCVI
Date:
2018/11/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002185845.2 (latest)
RefSeq assembly accession:
GCF_002185845.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NEZA02
Assembly method:
SPAdes v. 3.10.0
Expected final version:
no
Genome coverage:
131.24x
Sequencing technology:
Illumina NextSeq 500

IDs: 2074031 [UID] 7792728 [GenBank] 7844828 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7125 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2018 03:47:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,951
CDS (total)::4,874
Genes (coding)::4,755
CDS (coding)::4,755
Genes (RNA)::77
rRNAs::2, 2, 3 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1, 3 (16S, 23S)
tRNAs::64
ncRNAs::6
Pseudo Genes (total)::119
Pseudo Genes (ambiguous residues)::0 of 119
Pseudo Genes (frameshifted)::46 of 119
Pseudo Genes (incomplete)::57 of 119
Pseudo Genes (internal stop)::38 of 119
Pseudo Genes (multiple problems)::19 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,001,133
Total ungapped length5,001,133
Number of contigs43
Contig N50227,418
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)43

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,001,133435,001,133227,41800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaechei subsp. xiangfangensisEnterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729785.1Enterobacter hormaechei subsp. xiangfangensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729785.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2185.9992.25
Best-match type99.2185.9992.25

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna