U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



WEWSeq v.1.0

Organism name:
Triticum dicoccoides (wild emmer wheat)
Infraspecific name:
Ecotype: Zavitan
Isolate:
Atlit2015
BioSample:
SAMN04448013
BioProject:
PRJNA310175
Submitter:
WEWseq consortium
Date:
2017/06/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002162155.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LSYQ01
Assembly method:
NRGene denovoMagic v. 2
Expected final version:
yes
Genome coverage:
176.0x
Sequencing technology:
Illumina

IDs: 1116171 [UID] 4541808 [GenBank]

See Genome Information for Triticum dicoccoides

Pathogen Detection Resources

There are 18 assemblies for this organism

See more

History (Show revision history)

Comment

In the interest of rapid and broad dissemination of data resources to the community, we are releasing this assembly prior to scientific publication in accordance with guidelines set forth by the Toronto agreement for prepublication data sharing and expectations ... about use of the data (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html; Nature. 2009 461:168).  more

Global statistics

Total sequence length10,494,855,601
Total ungapped length10,323,395,219
Gaps between scaffolds0
Number of scaffolds149,134
Scaffold N50726,427,787
Scaffold L507
Number of contigs493,549
Contig N5057,368
Contig L5053,280
Total number of chromosomes and plasmids14
Number of component sequences (WGS or clone)149,134

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_002162165.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1ACM007921.1n/an/a0
Chromosome 1BCM007922.1n/an/a0
Chromosome 2ACM007923.1n/an/a0
Chromosome 2BCM007924.1n/an/a0
Chromosome 3ACM007925.1n/an/a0
Chromosome 3BCM007926.1n/an/a0
Chromosome 4ACM007927.1n/an/a0
Chromosome 4BCM007928.1n/an/a0
Chromosome 5ACM007929.1n/an/a0
Chromosome 5BCM007930.1n/an/a0
Chromosome 6ACM007931.1n/an/a0
Chromosome 6BCM007932.1n/an/a0
Chromosome 7ACM007933.1n/an/a0
Chromosome 7BCM007934.1n/an/a0
unplacedn/an/an/a149,120

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All10,494,855,601149,13410,323,395,219726,427,787344,4150
Chromosome 1A593,586,8101585,358,717593,586,81018,1300
Chromosome 1B690,537,8041679,507,080690,537,80423,3990
Chromosome 2A775,183,9431764,437,182775,183,94323,8020
Chromosome 2B803,365,4661791,358,810803,365,46626,5950
Chromosome 3A754,274,5181743,839,968754,274,51822,8120
Chromosome 3B841,096,2761827,748,505841,096,27628,8720
Chromosome 4A726,427,7871715,660,361726,427,78723,0750
Chromosome 4B673,896,4661664,082,181673,896,46621,2860
Chromosome 5A700,855,5991691,202,857700,855,59921,5120
Chromosome 5B712,180,8951700,915,297712,180,89524,4920
Chromosome 6A621,432,0511612,835,755621,432,05118,8340
Chromosome 6B703,217,3221692,164,878703,217,32223,6810
Chromosome 7A727,576,1081716,586,138727,576,10824,1840
Chromosome 7B755,408,3491742,865,000755,408,34926,7900
unplaced415,816,207149,120394,832,4908,43016,9510