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ASM215457v1

Organism name:
Streptomyces bobili (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-1338
BioSample:
SAMN06277082
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002154575.1 (latest)
RefSeq assembly accession:
GCF_002154575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUBA01
Assembly method:
CLC Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 1109981 [UID] 4493328 [GenBank] 4528638 [RefSeq]

See Genome Information for Streptomyces bobili

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL.

Global statistics

Total sequence length8,062,541
Total ungapped length8,059,380
Gaps between scaffolds0
Number of scaffolds946
Scaffold N5017,336
Scaffold L50131
Number of contigs1,024
Contig N5017,336
Contig L50132
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)946

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,062,5419468,059,38017,336780

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces bobiliStreptomyces bobili

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008704575.1Streptomyces galilaeustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8382.9586.19

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected