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DsW_057

Organism name:
Acetobacter malorum (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DsW_057
BioSample:
SAMN02866235
BioProject:
PRJNA253128
Submitter:
Cornell University
Date:
2017/05/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002153605.1 (latest)
RefSeq assembly accession:
GCF_002153605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOPG01
Assembly method:
Velvet v. 1.2.03
Expected final version:
yes
Genome coverage:
51.0x
Sequencing technology:
Illumina HiSeq

IDs: 1109431 [UID] 4492358 [GenBank] 4527338 [RefSeq]

See Genome Information for Acetobacter malorum

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/26/2014 14:44:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 438450)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,505
CDS::2,434
Pseudo Genes::24
rRNAs::3 (5S, 16S, 23S)
tRNAs::43
ncRNA::1
Frameshifted Genes::17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,088,878
Total ungapped length3,088,878
Number of contigs111
Contig N50108,975
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,088,8781113,088,878108,97500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acetobacter malorumAcetobacter malorum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025995655.1Acetobacter malorum DSM 14337suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025996195.1Acetobacter cerevisiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.8079.2363.72
Best-match type91.1579.2278.38

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna