U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM215076v1

Organism name:
Lentzea kentuckyensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-24416
BioSample:
SAMN06294978
BioProject:
PRJNA369760
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002150765.1 (latest)
RefSeq assembly accession:
GCF_002150765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUYM01
Assembly method:
CLCbio Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Illumina MiSeq

IDs: 1108061 [UID] 4489588 [GenBank] 4527478 [RefSeq]

See Genome Information for Lentzea kentuckyensis

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL USA.

Global statistics

Total sequence length10,210,611
Total ungapped length10,208,323
Gaps between scaffolds0
Number of scaffolds261
Scaffold N5099,903
Scaffold L5032
Number of contigs317
Contig N5092,128
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)261

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,210,61126110,208,32399,903560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lentzea kentuckyensisLentzea kentuckyensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_011067745.1Lentzea albatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.0274.3074.28

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected