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ASM214856v1

Organism name:
Neisseria meningitidis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Nm612
BioSample:
SAMN05437686
BioProject:
PRJNA329301
Submitter:
Oswaldo Cruz Institute
Date:
2017/05/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002148565.1 (latest)
RefSeq assembly accession:
GCF_002148565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MCAG01
Assembly method:
A5-miseq v. 20141120
Expected final version:
yes
Genome coverage:
79.0x
Sequencing technology:
Illumina HiSeq

IDs: 1106941 [UID] 4487128 [GenBank] 4521988 [RefSeq]

See Genome Information for Neisseria meningitidis

There are 8126 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/25/2016 17:44:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,223
CDS (total)::2,171
Genes (coding)::2,018
CDS (coding)::2,018
Genes (RNA)::52
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::51 of 153
Pseudo Genes (incomplete)::97 of 153
Pseudo Genes (internal stop)::15 of 153
Pseudo Genes (multiple problems)::8 of 153
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,122,280
Total ungapped length2,122,280
Number of contigs100
Contig N5050,320
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,122,2801002,122,28050,32000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Neisseria meningitidisNeisseria meningitidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022869645.1Neisseria meningitidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022869645.1Neisseria meningitidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3491.0288.55
Best-match type97.3491.0288.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna