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Ovir.te_1.0

Organism name:
Odocoileus virginianus texanus (white-tailed deer)
Isolate:
animal Pink-7
Sex:
male
BioSample:
SAMN05363940
BioProject:
PRJNA317745
Submitter:
Baylor College of Medicine
Date:
2017/04/20
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002102435.1 (latest)
RefSeq assembly accession:
GCF_002102435.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
MLBE01
Assembly method:
Allpath-lg v. v43839; Redundans v. 0.12c
Expected final version:
no
Genome coverage:
150.0x
Sequencing technology:
Illumina

IDs: 1076411 [UID] 4389548 [GenBank] 4410458 [RefSeq]

See Genome Information for Odocoileus virginianus

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,380,505,687
Total ungapped length2,359,014,916
Gaps between scaffolds0
Number of scaffolds17,026
Scaffold N50850,721
Scaffold L50758
Number of contigs48,653
Contig N50122,019
Contig L505,324
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)48,653

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,380,489,21017,0252,358,998,439850,72131,6270
MoleculeTotal
Length
Mitochondrion MT16,477
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