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ASM210163v1

Organism name:
Mycobacterium florentinum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 44852
BioSample:
SAMN04216926
BioProject:
PRJNA299467
Submitter:
University of Trento
Date:
2017/04/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002101635.1 (latest)
RefSeq assembly accession:
GCF_002101635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LQOV01
Assembly method:
Spades v. 3.5.0
Expected final version:
yes
Genome coverage:
101x
Sequencing technology:
Illumina HiSeq

IDs: 1075961 [UID] 4388728 [GenBank] 4404538 [RefSeq]

See Genome Information for Mycobacterium florentinum

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2016 13:50:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,778
CDS (total)::5,725
Genes (coding)::5,631
CDS (coding)::5,631
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::94
Pseudo Genes (ambiguous residues)::0 of 94
Pseudo Genes (frameshifted)::23 of 94
Pseudo Genes (incomplete)::69 of 94
Pseudo Genes (internal stop)::9 of 94
Pseudo Genes (multiple problems)::7 of 94
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,178,353
Total ungapped length6,178,353
Number of contigs34
Contig N50518,602
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,178,353346,178,353518,60200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium florentinumMycobacterium florentinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010730355.1Mycobacterium florentinumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010730355.1Mycobacterium florentinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9999.32
Best-match type99.9999.9999.32

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna