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ASM209637v1

Organism name:
Streptococcus oralis subsp. oralis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: RH_8610_08
BioSample:
SAMN06705625
BioProject:
PRJNA304678
Submitter:
Slagelse Hospital
Date:
2017/04/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002096375.1 (latest)
RefSeq assembly accession:
GCF_002096375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NCUJ01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
yes
Genome coverage:
6.51x
Sequencing technology:
Illumina HiSeq

IDs: 1073381 [UID] 4383408 [GenBank] 4392748 [RefSeq]

See Genome Information for Streptococcus oralis

There are 280 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Xiaohui Chen Nielsen, Department of Clinical Microbiology, Slagelse Hospital, Denmark.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/13/2017 11:52:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,967
CDS (total)::1,913
Genes (coding)::1,874
CDS (coding)::1,874
Genes (RNA)::54
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::10 of 39
Pseudo Genes (incomplete)::23 of 39
Pseudo Genes (internal stop)::14 of 39
Pseudo Genes (multiple problems)::8 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,990,764
Total ungapped length1,990,764
Number of contigs18
Contig N50392,938
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,990,764181,990,764392,93800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus oralis subsp. oralisStreptococcus oralis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002014885.1Streptococcus oralistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002014885.1Streptococcus oralistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.7184.3787.95
Best-match type94.7184.3787.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna