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ASM208647v1

Organism name:
Mycobacterium paraseoulense (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 45000
BioSample:
SAMN06064254
BioProject:
PRJNA354248
Submitter:
San Raffaele Scientific Institute
Date:
2017/04/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002086475.1 (latest)
RefSeq assembly accession:
GCF_002086475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MVIE01
Assembly method:
SPAdes v. 3.9.1
Genome coverage:
23.5x
Sequencing technology:
Illumina

IDs: 1066181 [UID] 4354688 [GenBank] 4359978 [RefSeq]

See Genome Information for Mycobacterium paraseoulense

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/17/2017 12:31:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,867
CDS (total)::5,814
Genes (coding)::5,694
CDS (coding)::5,694
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::120
Pseudo Genes (ambiguous residues)::0 of 120
Pseudo Genes (frameshifted)::41 of 120
Pseudo Genes (incomplete)::78 of 120
Pseudo Genes (internal stop)::20 of 120
Pseudo Genes (multiple problems)::19 of 120
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,078,492
Total ungapped length6,078,492
Number of contigs267
Contig N50108,116
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)267

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,078,4922676,078,492108,11600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium paraseoulenseMycobacterium paraseoulense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010731655.1Mycobacterium paraseoulensetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010731655.1Mycobacterium paraseoulensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.2299.10
Best-match type99.9999.2299.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna