Format

Send to:

Choose Destination

Download Assembly



ASM206811v1

Organism name:
Pectobacterium brasiliense (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SX309
BioSample:
SAMN06605957
BioProject:
PRJNA379343
Submitter:
Chinese Academy of Agricultural Sciences
Date:
2017/03/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002068115.1 (latest)
RefSeq assembly accession:
GCF_002068115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis v. v2.3.0
Expected final version:
yes
Genome coverage:
90.89x
Sequencing technology:
PacBio

IDs: 1051831 [UID] 4291428 [GenBank] 4306188 [RefSeq]

See Genome Information for Pectobacterium brasiliense

There are 99 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/28/2021 21:18:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,406
CDSs (total)::4,302
Genes (coding)::4,218
CDSs (with protein)::4,218
Genes (RNA)::104
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::6
Pseudo Genes (total)::84
CDSs (without protein)::84
Pseudo Genes (ambiguous residues)::0 of 84
Pseudo Genes (frameshifted)::33 of 84
Pseudo Genes (incomplete)::57 of 84
Pseudo Genes (internal stop)::15 of 84
Pseudo Genes (multiple problems)::19 of 84
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,966,299
Total ungapped length4,966,299
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002068125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP020350.1=NZ_CP020350.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,966,299

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pectobacterium brasiliensePectobacterium brasiliense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016950255.1Pectobacterium brasiliensetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016950255.1Pectobacterium brasiliensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2184.2485.72
Best-match type96.2184.2485.72

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center