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ASM202175v1

Organism name:
Vibrio owensii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: XSBZ03
BioSample:
SAMN05213947
BioProject:
PRJNA314425
Submitter:
Hainan University
Date:
2017/03/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002021755.1 (latest)
RefSeq assembly accession:
GCF_002021755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis v. v2.3.0
Genome coverage:
151.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1020731 [UID] 4184898 [GenBank] 4191998 [RefSeq]

See Genome Information for Vibrio owensii

There are 24 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/13/2022 18:52:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,322
CDSs (total)::5,146
Genes (coding)::5,128
CDSs (with protein)::5,128
Genes (RNA)::176
rRNAs::13, 12, 12 (5S, 16S, 23S)
complete rRNAs::13, 12, 12 (5S, 16S, 23S)
tRNAs::135
ncRNAs::4
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::10 of 18
Pseudo Genes (incomplete)::5 of 18
Pseudo Genes (internal stop)::4 of 18
Pseudo Genes (multiple problems)::1 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,890,205
Total ungapped length5,890,205
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002021765.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP019959.1=NZ_CP019959.1
Chromosome 2CP019960.1=NZ_CP019960.1

Assembly statistics

MoleculeTotal
Length
All5,890,205
Chromosome 13,567,557
Chromosome 22,322,648

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio owensiiVibrio owensii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000817815.1Vibrio owensii CAIM 1854 = LMG 25443type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000817815.1Vibrio owensiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8986.3880.18
Best-match type96.8986.3880.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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