U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM199414v1

Organism name:
Burkholderia cenocepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: VC5617
BioSample:
SAMN05001994
BioProject:
PRJNA289138
Submitter:
University of British Columbia
Date:
2017/02/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001994145.1 (latest)
RefSeq assembly accession:
GCF_001994145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUWE01
Assembly method:
Ray v. 2.3.1
Genome coverage:
66.6167x
Sequencing technology:
Illumina HiSeq

IDs: 1002221 [UID] 4117348 [GenBank] 4129828 [RefSeq]

See Genome Information for Burkholderia cenocepacia

There are 647 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from DNA available from Canadian Burkholderia cepacia complex research and Referral Repository.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/07/2017 10:36:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,243
CDS (total)::7,163
Genes (coding)::6,946
CDS (coding)::6,946
Genes (RNA)::80
rRNAs::7, 2, 4 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 3 (16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::217
Pseudo Genes (ambiguous residues)::0 of 217
Pseudo Genes (frameshifted)::100 of 217
Pseudo Genes (incomplete)::115 of 217
Pseudo Genes (internal stop)::31 of 217
Pseudo Genes (multiple problems)::27 of 217
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,548,615
Total ungapped length7,548,615
Number of contigs166
Contig N5081,967
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)166

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,548,6151667,548,61581,96700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cenocepaciaBurkholderia cenocepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900446215.1Burkholderia cenocepaciatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900446215.1Burkholderia cenocepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9985.3780.16
Best-match type98.9985.3780.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna