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ASM197083v1

  • Anomalous assembly.
Organism name:
Klebsiella oxytoca (enterobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: CAV1752
BioSample:
SAMN03733848
BioProject:
PRJNA246471
Submitter:
University of Oxford
Date:
2016/12/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_001970835.1 (latest)
RefSeq assembly accession:
GCF_001970835.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. unspecified
Genome coverage:
110x
Sequencing technology:
PacBio

IDs: 962501 [UID] 4012878 [GenBank] 4058928 [RefSeq]

See Genome Information for Klebsiella oxytoca

Pathogen Detection Resources

There are 1026 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/05/2016 17:46:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,264
CDS (total)::6,144
Genes (coding)::5,948
CDS (coding)::5,948
Genes (RNA)::120
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::10
Pseudo Genes (total)::196
Pseudo Genes (ambiguous residues)::0 of 196
Pseudo Genes (frameshifted)::78 of 196
Pseudo Genes (incomplete)::91 of 196
Pseudo Genes (internal stop)::68 of 196
Pseudo Genes (multiple problems)::37 of 196
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,394,387
Total ungapped length6,394,387
Total number of chromosomes and plasmids6

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001970845.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP018362.1=NZ_CP018362.1
Plasmid pCAV1752-111CP018360.1=NZ_CP018360.1
Plasmid pCAV1752-278CP018361.1=NZ_CP018361.1
Plasmid pCAV1752-3851CP018357.1=NZ_CP018357.1
Plasmid pCAV1752-4374CP018358.1=NZ_CP018358.1
Plasmid pCAV1752-5521CP018359.1=NZ_CP018359.1

Assembly statistics

MoleculeTotal
Length
All6,394,387
Chromosome 5,992,008
Plasmid pCAV1752-111111,017
Plasmid pCAV1752-278277,616
Plasmid pCAV1752-38513,851
Plasmid pCAV1752-43744,374
Plasmid pCAV1752-55215,521

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella oxytocaKlebsiella oxytoca

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636985.1Klebsiella oxytocatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002925905.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.5477.0684.13
Best-match type98.7986.1488.94

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna