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ASM195631v1

Organism name:
Sphingomonas montana (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: W16RD
BioSample:
SAMN05928587
BioProject:
PRJNA349220
Submitter:
Institute of Tibetan Plateau Research, Chinese Academy of Sciences
Date:
2017/01/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001956315.1 (latest)
RefSeq assembly accession:
GCF_001956315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MOLY01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina

IDs: 954351 [UID] 3989908 [GenBank] 4005918 [RefSeq]

See Genome Information for Sphingomonas montana

History (Show revision history)

Comment

Bacteria and source DNA available from Gengxin Zhang. Key Laboratory of Alpine Ecology and Biodiversity, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China.

Global statistics

Total sequence length3,722,743
Total ungapped length3,722,730
Gaps between scaffolds0
Number of scaffolds35
Scaffold N50202,237
Scaffold L506
Number of contigs48
Contig N50163,730
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,722,743353,722,730202,237130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonas montanaSphingomonas montana

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009755805.1Sphingomonas pratitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.9154.1152.58

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected