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ASM194963v1

Organism name:
Clostridium perfringens (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: JFP961
BioSample:
SAMN05323901
BioProject:
PRJNA327451
Submitter:
Ontario Veterinary College, University of Guelph
Date:
2017/01/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001949635.1 (latest)
RefSeq assembly accession:
GCF_001949635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MARZ01
Assembly method:
DNASTAR SeqMan v. NGEN12
Expected final version:
yes
Genome coverage:
95.0x
Sequencing technology:
Illumina HiSeq

IDs: 950731 [UID] 3972018 [GenBank] 3977338 [RefSeq]

See Genome Information for Clostridium perfringens

There are 1876 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,617,219
Total ungapped length3,617,219
Number of contigs66
Contig N50138,753
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,617,219663,617,219138,75300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium perfringensClostridium perfringens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016027375.1Clostridium perfringenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016027375.1Clostridium perfringenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1581.0987.42
Best-match type97.1581.0987.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna