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Source database (GenBank or RefSeq) File type

ASM193261v1

Organism name:: Weissella jogaejeotgali (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: FOL01
BioSample:: SAMN04193338
BioProject:: PRJNA299085
Submitter:: Kyung Hee university
Date:: 2017/01/04
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001932615.1 (latest)
RefSeq assembly accession:: GCF_001932615.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT Analysis v. 2.3.0 HGAP.2
Genome coverage:: 497.32
Sequencing technology:: PacBio

IDs: 940261 [UID] 3935998 [GenBank] 3947618 [RefSeq]

See Genome Information for Weissella jogaejeotgali

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001932615.1	=	GCF_001932615.1	ASM193261v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 14:42:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,161
CDSs (total)::2,058
Genes (coding)::2,004
CDSs (with protein)::2,004
Genes (RNA)::103
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::75
ncRNAs::3
Pseudo Genes (total)::54
CDSs (without protein)::54
Pseudo Genes (ambiguous residues)::0 of 54
Pseudo Genes (frameshifted)::22 of 54
Pseudo Genes (incomplete)::28 of 54
Pseudo Genes (internal stop)::14 of 54
Pseudo Genes (multiple problems)::9 of 54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,149,545
Total ungapped length	2,149,545
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP014332.1	=	NZ_CP014332.1
Plasmid pFOL01	CP014333.1	=	NZ_CP014333.1

Molecule	Total Length
All	2,149,545
Chromosome	2,114,163
Plasmid pFOL01	35,382

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.58	84.18	91.21

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ASM193261v1

See Genome Information for Weissella jogaejeotgali

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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