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ASM193122v1

Organism name:
Pasteurella multocida (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 8522APM
Isolate:
swab isolate 1
BioSample:
SAMN04366591
BioProject:
PRJNA306895
Submitter:
University of California, Davis
Date:
2017/01/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001931225.1 (latest)
RefSeq assembly accession:
GCF_001931225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LQGR01
Assembly method:
SPAdes v. 3.5.0
Expected final version:
yes
Genome coverage:
20.46x
Sequencing technology:
Illumina HiSeq

IDs: 939581 [UID] 3934618 [GenBank] 3949868 [RefSeq]

See Genome Information for Pasteurella multocida

There are 1554 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,289,856
Total ungapped length2,289,609
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50141,020
Scaffold L504
Number of contigs29
Contig N50141,020
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,289,856282,289,609141,02010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella multocidaPasteurella multocida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000754275.1Pasteurella multocidatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000754275.1Pasteurella multocidatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9195.7396.48
Best-match type99.9195.7396.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna