U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM191625v1

  • Anomalous assembly.
Organism name:
Coprobacillus sp. CAG:235_29_27 (firmicutes)
Taxonomy check:
Failed
Isolate:
CAG:235_29_27
BioSample:
SAMN05717260
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • derived from metagenome
GenBank assembly accession:
GCA_001916255.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNSC01
Assembly method:
IDBA_UD v. 1.1
Genome coverage:
1x
Sequencing technology:
Illumina HiSeq

IDs: 932101 [UID] 3916458 [GenBank]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 12:42:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,522
CDS (total)::2,476
Genes (coding)::2,375
CDS (coding)::2,375
Genes (RNA)::46
rRNAs::1, 1 (5S, 16S)
complete rRNAs::
partial rRNAs::1, 1 (5S, 16S)
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::101
Pseudo Genes (ambiguous residues)::5 of 101
Pseudo Genes (frameshifted)::46 of 101
Pseudo Genes (incomplete)::41 of 101
Pseudo Genes (internal stop)::24 of 101
Pseudo Genes (multiple problems)::14 of 101
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,456,578
Total ungapped length2,455,392
Gaps between scaffolds0
Number of scaffolds81
Scaffold N5050,584
Scaffold L5014
Number of contigs94
Contig N5046,105
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,456,578812,455,39250,584130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coprobacillus sp. CAG:235_29_27Coprobacillus sp. CAG:235_29_27

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025566905.1[Clostridium] ammoniilyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.8086.2577.78

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna