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LycPicSAfr1.0

Organism name:
Lycaon pictus (African hunting dog)
Isolate:
South Africa Ananku
Sex:
male
BioSample:
SAMN04312208
BioProject:
PRJNA304992
Submitter:
Smithsonian Institution
Date:
2016/12/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001887905.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LPRB01
Assembly method:
BWA v. 0.7.12
Expected final version:
yes
Reference guided assembly:
GCA_000002285.2
Genome coverage:
5.7x
Sequencing technology:
Illumina HiSeq

IDs: 895291 [UID] 3746848 [GenBank]

See Genome Information for Lycaon pictus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,358,143,818
Total ungapped length2,187,460,700
Gaps between scaffolds0
Number of scaffolds803
Scaffold N5063,240,551
Scaffold L5015
Number of contigs797,755
Contig N505,555
Contig L50113,651
Total number of chromosomes and plasmids41
Number of component sequences (WGS or clone)803

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001887915.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM007565.1n/an/a0
Chromosome 2CM007566.1n/an/a0
Chromosome 3CM007567.1n/an/a0
Chromosome 4CM007568.1n/an/a0
Chromosome 5CM007569.1n/an/a0
Chromosome 6CM007570.1n/an/a0
Chromosome 7CM007571.1n/an/a0
Chromosome 8CM007572.1n/an/a0
Chromosome 9CM007573.1n/an/a0
Chromosome 10CM007574.1n/an/a0
Chromosome 11CM007576.1n/an/a0
Chromosome 12CM007577.1n/an/a0
Chromosome 13CM007578.1n/an/a0
Chromosome 14CM007579.1n/an/a0
Chromosome 15CM007580.1n/an/a0
Chromosome 16CM007581.1n/an/a0
Chromosome 17CM007582.1n/an/a0
Chromosome 18CM007583.1n/an/a0
Chromosome 19CM007584.1n/an/a0
Chromosome 20CM007585.1n/an/a0
Chromosome 21CM007586.1n/an/a0
Chromosome 22CM007587.1n/an/a0
Chromosome 23CM007588.1n/an/a0
Chromosome 24CM007589.1n/an/a0
Chromosome 25CM007590.1n/an/a0
Chromosome 26CM007591.1n/an/a0
Chromosome 27CM007592.1n/an/a0
Chromosome 28CM007593.1n/an/a0
Chromosome 29CM007594.1n/an/a0
Chromosome 30CM007555.1n/an/a0
Chromosome 31CM007556.1n/an/a0
Chromosome 32CM007557.1n/an/a0
Chromosome 33CM007558.1n/an/a0
Chromosome 34CM007559.1n/an/a0
Chromosome 35CM007560.1n/an/a0
Chromosome 36CM007561.1n/an/a0
Chromosome 37CM007562.1n/an/a0
Chromosome 38CM007563.1n/an/a0
Chromosome XCM007575.1n/an/a0
Chromosome YCM007564.1n/an/a0
unplacedn/an/an/a762

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,358,127,1098022,187,443,99163,240,551796,9520
Chromosome 1122,647,1821115,375,524122,647,18237,0500
Chromosome 285,426,570178,765,71785,426,57026,5290
Chromosome 391,888,778187,173,01091,888,77826,6860
Chromosome 488,276,357184,124,62188,276,35725,9670
Chromosome 588,915,096185,204,18888,915,09624,9740
Chromosome 677,559,626173,565,28377,559,62622,9740
Chromosome 780,974,255176,770,12480,974,25522,6710
Chromosome 874,325,445169,820,16374,325,44523,4050
Chromosome 961,073,796156,563,03861,073,79619,5370
Chromosome 1069,326,197165,835,00069,326,19721,8020
Chromosome 1174,388,519168,897,22874,388,51921,9440
Chromosome 1272,497,890168,865,21072,497,89022,2320
Chromosome 1363,240,551159,613,61063,240,55119,6380
Chromosome 1460,963,907157,609,25060,963,90717,6970
Chromosome 1564,190,696160,596,50764,190,69620,9440
Chromosome 1659,628,241154,834,01659,628,24119,1840
Chromosome 1764,259,867160,711,21264,259,86719,3700
Chromosome 1855,820,886151,829,64255,820,88618,4750
Chromosome 1953,741,443150,829,32153,741,44317,2430
Chromosome 2058,133,239155,274,98458,133,23917,4970
Chromosome 2150,855,280147,628,07050,855,28016,6140
Chromosome 2261,382,224158,316,87261,382,22418,3220
Chromosome 2352,294,338149,768,50452,294,33815,0330
Chromosome 2447,698,119145,214,71147,698,11914,9620
Chromosome 2551,628,521148,648,51951,628,52115,8560
Chromosome 2638,964,370134,787,74138,964,37013,2050
Chromosome 2745,853,754143,148,22045,853,75415,5750
Chromosome 2841,180,981139,027,40441,180,98113,2730
Chromosome 2941,843,628139,519,41141,843,62813,5130
Chromosome 3040,212,183138,242,03840,212,18312,5350
Chromosome 3139,895,028135,983,51539,895,02813,4790
Chromosome 3238,806,596136,618,44338,806,59612,6920
Chromosome 3331,376,848129,775,86231,376,84810,1300
Chromosome 3442,113,656139,881,64842,113,65613,2230
Chromosome 3526,524,611125,124,25726,524,6118,4560
Chromosome 3630,810,736129,479,16230,810,7369,2100
Chromosome 3730,896,855129,351,60630,896,8559,6060
Chromosome 3823,913,985122,591,83023,913,9858,3740
Chromosome X123,855,2491102,996,055123,855,249108,7510
Chromosome Y2,462,20712,396,6472,462,2075800
unplaced28,279,3997626,685,828383,1017,7440
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,709116,70916,70900