Format

Send to:

Choose Destination

Download Assembly



ASM188403v1

Organism name:
Bacillus tropicus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: N24
BioSample:
SAMN05231550
BioProject:
PRJNA325891
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884035.1 (latest)
RefSeq assembly accession:
GCF_001884035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MACG01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893201 [UID] 3737568 [GenBank] 3740848 [RefSeq]

See Genome Information for Bacillus tropicus

There are 18 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This project was originally submitted as Bacillus sp. N24. The organism name was changed to Bacillus sp. N24 in ... August 2018.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/17/2016 16:15:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,386
CDS (total)::5,354
Genes (coding)::5,218
CDS (coding)::5,218
Genes (RNA)::32
rRNAs::2, 3, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::2, 2, 1 (5S, 16S, 23S)
tRNAs::20
ncRNAs::5
Pseudo Genes (total)::136
Pseudo Genes (ambiguous residues)::0 of 136
Pseudo Genes (frameshifted)::43 of 136
Pseudo Genes (incomplete)::72 of 136
Pseudo Genes (internal stop)::38 of 136
Pseudo Genes (multiple problems)::13 of 136
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,217,784
Total ungapped length5,217,784
Number of contigs78
Contig N50207,933
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,217,784785,217,784207,93300
Support Center