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PanPar1.0

Organism name:
Panthera pardus (leopard)
Isolate:
Maewha
Sex:
female
BioSample:
SAMN04347630
BioProject:
PRJNA306701
Submitter:
Ulsan National Institute of Science and Technology
Date:
2016/11/16
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001857705.1 (latest)
RefSeq assembly accession:
GCF_001857705.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
LQGZ01
Assembly method:
SOAPdenovo v. r240
Expected final version:
yes
Genome coverage:
158.5x
Sequencing technology:
Illumina HiSeq

IDs: 890281 [UID] 3727398 [GenBank] 3746008 [RefSeq]

See Genome Information for Panthera pardus

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,578,019,207
Total ungapped length2,478,865,742
Gaps between scaffolds0
Number of scaffolds50,377
Scaffold N5021,701,857
Scaffold L5039
Number of contigs265,330
Contig N5020,993
Contig L5034,315
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)265,330

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,578,002,24350,3762,478,848,77821,701,857214,9530
MoleculeTotal
Length
Mitochondrion MT16,964
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