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ASM176541v1

Organism name:
Candidatus Melainabacteria bacterium MEL.A1 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
MEL.A1
BioSample:
SAMN05425469
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/10/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001765415.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
idba_ud v. 1.1.1
Expected final version:
yes
Genome coverage:
73.0x
Sequencing technology:
Illumina HiSeq

IDs: 815531 [UID] 3514508 [GenBank]

See Genome Information for Candidatus Melainabacteria bacterium MEL.A1

History (Show revision history)

Comment

Bacteria and/or source DNA is available from Prof. Ruth E. Ley
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2016 10:50:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,838
CDS (total)::1,788
Genes (coding)::1,772
CDS (coding)::1,772
Genes (RNA)::50
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::41
ncRNAs::3
Pseudo Genes (total)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::3 of 16
Pseudo Genes (incomplete)::12 of 16
Pseudo Genes (internal stop)::1 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,867,336
Total ungapped length1,867,336
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001765425.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017245.1n/an/a

Assembly statistics

MoleculeTotal
Length
Chromosome 1,867,336

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Melainabacteria bacterium MEL.A1Candidatus Melainabacteria bacterium MEL.A1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004116555.1Malaciobacter mytilitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type78.660.050.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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