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ASM173580v1

Organism name:
Streptomyces fodineus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TW1S1
BioSample:
SAMN05520841
BioProject:
PRJNA338069
Submitter:
Chungnam National University
Date:
2016/09/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001735805.1 (latest)
RefSeq assembly accession:
GCF_001735805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly v. 3.0
Expected final version:
yes
Genome coverage:
67.0x
Sequencing technology:
PacBio

IDs: 797511 [UID] 3457298 [GenBank] 3473398 [RefSeq]

See Genome Information for Streptomyces fodineus

History (Show revision history)

Comment

Annotation modified by submitter
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 14:31:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,735
CDSs (total)::8,645
Genes (coding)::8,216
CDSs (with protein)::8,216
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::429
CDSs (without protein)::429
Pseudo Genes (ambiguous residues)::0 of 429
Pseudo Genes (frameshifted)::202 of 429
Pseudo Genes (incomplete)::316 of 429
Pseudo Genes (internal stop)::29 of 429
Pseudo Genes (multiple problems)::107 of 429
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,698,948
Total ungapped length9,698,948
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001735815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017248.1=NZ_CP017248.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,698,948

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces fodineusStreptomyces fodineus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020819595.1Streptomyces barringtoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2464.6769.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected