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ASM173013v1

Organism name:
Acholeplasma laidlawii (mycoplasmas)
Taxonomy check:
OK
Infraspecific name:
Strain: MDBK/IPV
BioSample:
SAMN05761484
BioProject:
PRJNA342499
Submitter:
Universidade Federal do Rio Grande do Sul
Date:
2016/09/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001730135.1 (latest)
RefSeq assembly accession:
GCF_001730135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MIPS01
Assembly method:
Velvet v. 1.0
Expected final version:
yes
Genome coverage:
12.0x
Sequencing technology:
Illumina MiSeq

IDs: 796361 [UID] 3452698 [GenBank] 3455038 [RefSeq]

See Genome Information for Acholeplasma laidlawii

There are 18 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/12/2016 15:53:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,250
CDS (total)::1,208
Genes (coding)::1,183
CDS (coding)::1,183
Genes (RNA)::42
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
partial rRNAs::
tRNAs::33
ncRNAs::3
Pseudo Genes (total)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::5 of 25
Pseudo Genes (incomplete)::15 of 25
Pseudo Genes (internal stop)::6 of 25
Pseudo Genes (multiple problems)::1 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,307,942
Total ungapped length1,307,476
Gaps between scaffolds0
Number of scaffolds29
Scaffold N5086,549
Scaffold L505
Number of contigs30
Contig N5086,549
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,307,942291,307,47686,54910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acholeplasma laidlawiiAcholeplasma laidlawii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000018785.1Acholeplasma laidlawii PG-8Atype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000018785.1Acholeplasma laidlawiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8899.0386.49
Best-match type97.8899.0386.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna