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GavGan_comp1

Organism name:
Gavialis gangeticus (Gharial)
Isolate:
Ggan-Ray
Sex:
female
BioSample:
SAMN03102901
BioProject:
PRJNA172383
Submitter:
The International Crocodilian Genomes Working Group
Date:
2016/09/13
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001723915.1 (latest)
RefSeq assembly accession:
GCF_001723915.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
MDVQ01
Assembly method:
Ragout v. 2016-07-05
Expected final version:
no
Reference guided assembly:
JRWT00000000.1
Genome coverage:
81.0x
Sequencing technology:
Illumina HiSeq

IDs: 793051 [UID] 3442518 [GenBank] 3786308 [RefSeq]

See Genome Information for Gavialis gangeticus

There are 2 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length2,640,792,433
Total ungapped length1,942,637,146
Gaps between scaffolds0
Number of scaffolds81
Scaffold N5096,076,944
Scaffold L508
Number of contigs248,607
Contig N5014,799
Contig L5039,518
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)81

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,640,775,248801,942,619,96196,076,944248,5260
MoleculeTotal
Length
Mitochondrion MT17,185
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