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ASM170100v1

Organism name:
Staphylococcus carnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LTH 3730, SK 13, JCM 6069
BioSample:
SAMN05362534
BioProject:
PRJNA327949
Submitter:
University of Hohenheim
Date:
2016/08/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001701005.1 (latest)
RefSeq assembly accession:
GCF_001701005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRTanalysis, Pacific Biosciences v. version 2.3
Genome coverage:
>200-fold
Sequencing technology:
Pacific Biosciences

IDs: 778721 [UID] 3376318 [GenBank] 3380938 [RefSeq]

See Genome Information for Staphylococcus carnosus

There are 24 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 12:32:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,662
CDSs (total)::2,579
Genes (coding)::2,434
CDSs (with protein)::2,434
Genes (RNA)::83
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::145
CDSs (without protein)::145
Pseudo Genes (ambiguous residues)::0 of 145
Pseudo Genes (frameshifted)::115 of 145
Pseudo Genes (incomplete)::21 of 145
Pseudo Genes (internal stop)::18 of 145
Pseudo Genes (multiple problems)::9 of 145
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,645,106
Total ungapped length2,645,106
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001701015.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016760.1=NZ_CP016760.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,645,106

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus carnosusStaphylococcus carnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900458435.1Staphylococcus carnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458435.1Staphylococcus carnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7092.8895.34
Best-match type99.7092.8895.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna