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ASM169854v1

  • Anomalous assembly.
Organism name:
Rhinopithecus bieti (black snub-nosed monkey)
Isolate:
Rb0
Sex:
male
BioSample:
SAMN02786331
BioProject:
PRJNA315476
Submitter:
Laboratory for conservation and utilization of Bio-resource
Date:
2016/08/03
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_001698545.1 (replaced)
RefSeq assembly accession:
GCF_001698545.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
MCGX01
Assembly method:
Newbler v. 71; Anytag v. 70; GOBOND v. 69; GapCloser v. 1.12
Expected final version:
yes
Genome coverage:
76.6x
Sequencing technology:
Illumina HiSeq

IDs: 777531 [UID] 3372668 [GenBank] 3389058 [RefSeq]

See Genome Information for Rhinopithecus bieti

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In May 2022 1150 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length2,977,074,946
Total ungapped length2,801,910,470
Gaps between scaffolds0
Number of scaffolds105,032
Scaffold N502,225,337
Scaffold L50380
Number of contigs226,509
Contig N5036,417
Contig L5021,993
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)105,032

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,977,058,395105,0312,801,893,9192,225,337121,4770
MoleculeTotal
Length
Mitochondrion MT16,551