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ASM169814v1

Organism name:
Leuconostoc lactis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: WiKim40
BioSample:
SAMN05300424
BioProject:
PRJNA327015
Submitter:
world institute of kimchi
Date:
2016/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001698145.1 (latest)
RefSeq assembly accession:
GCF_001698145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. v1.3
Genome coverage:
553
Sequencing technology:
PacBio

IDs: 777301 [UID] 3371128 [GenBank] 3409178 [RefSeq]

See Genome Information for Leuconostoc lactis

There are 61 assemblies for this organism

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History (Show revision history)

Comment

Source DNA/bacteria are available from Minyoung Jung or Jonghee Lee at the World Institute of Kimchi
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 12:42:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,769
CDSs (total)::1,686
Genes (coding)::1,664
CDSs (with protein)::1,664
Genes (RNA)::83
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::22
CDSs (without protein)::22
Pseudo Genes (ambiguous residues)::0 of 22
Pseudo Genes (frameshifted)::7 of 22
Pseudo Genes (incomplete)::12 of 22
Pseudo Genes (internal stop)::4 of 22
Pseudo Genes (multiple problems)::1 of 22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,788,069
Total ungapped length1,788,069
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001698155.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016598.1=NZ_CP016598.1
Plasmid pWK40-1CP016599.1=NZ_CP016599.1
Plasmid pWK40-2CP016600.1=NZ_CP016600.1
Plasmid pWK40-3CP016601.1=NZ_CP016601.1

Assembly statistics

MoleculeTotal
Length
All1,788,069
Chromosome 1,737,502
Plasmid pWK40-120,388
Plasmid pWK40-219,726
Plasmid pWK40-310,453

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leuconostoc lactisLeuconostoc lactis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019656035.1Leuconostoc lactis KCTC 3528 = DSM 20202type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019656035.1Leuconostoc lactistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5381.7690.51
Best-match type97.5381.7690.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna