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ASM169178v3

Organism name:
Amanita brunnescens Koide BX004 (basidiomycete fungi)
Infraspecific name:
Strain: Koide BX004
BioSample:
SAMN02603359
BioProject:
PRJNA236753
Submitter:
Harvard University
Date:
2018/10/17
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001691785.3 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JNHV02
Assembly method:
AllpathsLG (simulated long range) v. 46452
Expected final version:
yes
Genome coverage:
260x
Sequencing technology:
Illumina HiSeq

IDs: 14410311 [UID] 37392108 [GenBank]

See Genome Information for Amanita brunnescens

History (Show revision history)

Comment

In July 2020 5 mitochondrial sequences of this project were suppressed.

Annotation was added to the contigs on November 2020.

Global statistics

Total sequence length36,016,155
Total ungapped length35,975,278
Gaps between scaffolds0
Number of scaffolds5,972
Scaffold N5012,963
Scaffold L50621
Number of contigs6,040
Contig N5012,726
Contig L50634
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5,972

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced36,016,1555,97235,975,27812,963680