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ASM169110v1

Organism name:
Aliivibrio fischeri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ZF73
BioSample:
SAMN04867926
BioProject:
PRJNA318805
Submitter:
Massachusetts Institute of Technology
Date:
2016/07/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001691105.1 (latest)
RefSeq assembly accession:
GCF_001691105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MAJX01
Assembly method:
CLC GWB v. 8.0
Expected final version:
yes
Genome coverage:
237.0x
Sequencing technology:
Illumina HiSeq

IDs: 772501 [UID] 3351948 [GenBank] 3356068 [RefSeq]

See Genome Information for Aliivibrio fischeri

There are 83 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/27/2016 16:02:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,810
CDS (total)::3,725
Genes (coding)::3,688
CDS (coding)::3,688
Genes (RNA)::85
rRNAs::6, 1, 1 (5S, 16S, 23S)
complete rRNAs::6, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::37
Pseudo Genes (ambiguous residues)::3 of 37
Pseudo Genes (frameshifted)::7 of 37
Pseudo Genes (incomplete)::26 of 37
Pseudo Genes (internal stop)::5 of 37
Pseudo Genes (multiple problems)::3 of 37
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,153,668
Total ungapped length4,151,838
Gaps between scaffolds0
Number of scaffolds128
Scaffold N50164,423
Scaffold L5010
Number of contigs156
Contig N50124,595
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)128

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,153,6681284,151,838164,423280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aliivibrio fischeriAliivibrio fischeri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016464335.1Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016464335.1Aliivibrio fischeritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6687.3884.36
Best-match type97.6687.3884.36

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna