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ASM169070v1

Organism name:
Gilliamella sp. wkB178 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: wkB178
BioSample:
SAMN05179587
BioProject:
PRJNA323464
Submitter:
University of Texas at Austin
Date:
2016/07/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001690705.1 (latest)
RefSeq assembly accession:
GCF_001690705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LZGK01
Assembly method:
MaSuRCA v. 3.1.0
Expected final version:
yes
Genome coverage:
12.0x
Sequencing technology:
Illumina MiSeq

IDs: 772301 [UID] 3351478 [GenBank] 3354428 [RefSeq]

See Genome Information for Gilliamella sp. wkB178

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/10/2016 12:07:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,191
CDS (total)::2,112
Genes (coding)::2,095
CDS (coding)::2,095
Genes (RNA)::79
rRNAs::4, 7, 11 (5S, 16S, 23S)
complete rRNAs::4 (5S)
partial rRNAs::7, 11 (16S, 23S)
tRNAs::52
ncRNAs::5
Pseudo Genes (total)::17
Pseudo Genes (ambiguous residues)::0 of 17
Pseudo Genes (frameshifted)::3 of 17
Pseudo Genes (incomplete)::9 of 17
Pseudo Genes (internal stop)::6 of 17
Pseudo Genes (multiple problems)::1 of 17
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,369,030
Total ungapped length2,369,030
Number of contigs16
Contig N50588,434
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,369,030162,369,030588,43400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gilliamella sp. wkB178Gilliamella sp. wkB178

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900094945.1Gilliamella bombicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.9122.4622.97

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna