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ASM168574v1

Organism name:
Bifidobacterium breve (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BR-10
BioSample:
SAMD00047598
BioProject:
PRJDB4597
Submitter:
Yakult Central Institute
Date:
2016/06/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001685745.1 (latest)
RefSeq assembly accession:
GCF_001685745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCXN01
Assembly method:
ABySS v. 1.3.5
Genome coverage:
60x
Sequencing technology:
Illumina MiSeq

IDs: 769831 [UID] 3344528 [GenBank] 3350228 [RefSeq]

See Genome Information for Bifidobacterium breve

Pathogen Detection Resources

There are 604 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,349,925
Total ungapped length2,349,925
Number of contigs60
Contig N50111,423
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,349,925602,349,925111,42300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium breveBifidobacterium breve

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000158015.1Bifidobacterium breve DSM 20213 = JCM 1192type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000158015.1Bifidobacterium brevetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4483.2583.97
Best-match type98.4483.2583.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna