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ASM168238v1

Organism name:
Azoarcus olearius (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DQS-4
BioSample:
SAMN03468107
BioProject:
PRJNA280719
Submitter:
UFPR
Date:
2016/07/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001682385.1 (latest)
RefSeq assembly accession:
GCF_001682385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler GS de novo assembler v. 2.8; Velvet v. 1.2.08; CLC De novo assembler v. 7.5
Genome coverage:
400x
Sequencing technology:
Illumina

IDs: 766671 [UID] 3335298 [GenBank] 3339358 [RefSeq]

See Genome Information for Azoarcus olearius

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA is available from Biochemistry and Molecular Biology Department of Universidade Federal do Parana

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 11:47:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,120
CDSs (total)::4,050
Genes (coding)::4,041
CDSs (with protein)::4,041
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::2 of 9
Pseudo Genes (incomplete)::7 of 9
Pseudo Genes (internal stop)::1 of 9
Pseudo Genes (multiple problems)::1 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,451,751
Total ungapped length4,451,751
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001682405.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016210.1=NZ_CP016210.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,451,751

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Azoarcus oleariusAzoarcus olearius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004361735.1Azoarcus indigenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.7334.8128.36

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected