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ASM168219v2

Organism name:
Flammeovirga sp. MY04 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MY04
BioSample:
SAMN03799769
BioProject:
PRJNA167040
Submitter:
shandong university
Date:
2020/04/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001682195.2 (latest)
RefSeq assembly accession:
GCF_001682195.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 7050591 [UID] 19358108 [GenBank] 19379468 [RefSeq]

See Genome Information for Flammeovirga sp. MY04

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2021 06:27:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,618
CDSs (total)::5,506
Genes (coding)::5,495
CDSs (with protein)::5,495
Genes (RNA)::112
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::2
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::6 of 11
Pseudo Genes (incomplete)::3 of 11
Pseudo Genes (internal stop)::3 of 11
Pseudo Genes (multiple problems)::1 of 11
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,327,614
Total ungapped length7,327,614
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001682205.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP003560.2=NZ_CP003560.2
Chromosome 2CP003561.2=NZ_CP003561.2
Plasmid unnamedCP003562.2=NZ_CP003562.2

Assembly statistics

MoleculeTotal
Length
All7,327,614
Chromosome 15,056,210
Chromosome 22,188,491
Plasmid unnamed82,913

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flammeovirga sp. MY04Flammeovirga sp. MY04

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018736045.1Flammeovirga yaeyamensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4587.5886.34

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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