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ASM168213v1

Organism name:
Thermosipho sp. 1070 (thermotogales)
Taxonomy check:
OK
Infraspecific name:
Strain: 1070
BioSample:
SAMN02444753
BioProject:
PRJNA231770
Submitter:
University of Oslo
Date:
2016/07/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001682135.1 (latest)
RefSeq assembly accession:
GCF_001682135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS_HGAP_Assembly v. 2
Genome coverage:
37.3541x
Sequencing technology:
Pacbio

IDs: 766541 [UID] 3334978 [GenBank] 4626918 [RefSeq]

See Genome Information for Thermosipho sp. 1070

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 11:32:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,824
CDSs (total)::1,761
Genes (coding)::1,754
CDSs (with protein)::1,754
Genes (RNA)::63
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::7
CDSs (without protein)::7
Pseudo Genes (ambiguous residues)::0 of 7
Pseudo Genes (frameshifted)::1 of 7
Pseudo Genes (incomplete)::6 of 7
Pseudo Genes (internal stop)::1 of 7
Pseudo Genes (multiple problems)::1 of 7
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,781,851
Total ungapped length1,781,851
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001682145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007121.1=NZ_CP007121.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,781,851

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermosipho sp. 1070Thermosipho sp. 1070

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001990485.1Thermosipho affectustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.1996.3696.95

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna