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ASM167585v1

Organism name:
Vibrio cyclitrophicus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UCD-FRSP16_18
BioSample:
SAMN05172613
BioProject:
PRJNA322702
Submitter:
UC Davis
Date:
2016/06/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001675855.1 (latest)
RefSeq assembly accession:
GCF_001675855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LZFT01
Assembly method:
A5-miseq v. 20150522
Expected final version:
yes
Genome coverage:
42.0x
Sequencing technology:
Illumina MiSeq

IDs: 763111 [UID] 3322648 [GenBank] 3322938 [RefSeq]

See Genome Information for Vibrio cyclitrophicus

There are 96 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/10/2016 09:17:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,480
CDS (total)::4,296
Genes (coding)::4,256
CDS (coding)::4,256
Genes (RNA)::184
rRNAs::14, 18, 22 (5S, 16S, 23S)
complete rRNAs::10 (5S)
partial rRNAs::4, 18, 22 (5S, 16S, 23S)
tRNAs::126
ncRNAs::4
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::11 of 40
Pseudo Genes (incomplete)::23 of 40
Pseudo Genes (internal stop)::10 of 40
Pseudo Genes (multiple problems)::3 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,040,447
Total ungapped length5,040,447
Number of contigs49
Contig N50534,326
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,040,447495,040,447534,32600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio cyclitrophicusVibrio cyclitrophicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024347435.1Vibrio cyclitrophicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024347435.1Vibrio cyclitrophicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0092.8788.70
Best-match type99.0092.8788.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna