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ASM167334v1

Organism name:
Mycobacterium asiaticum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1245335.1
BioSample:
SAMN04634168
BioProject:
PRJNA305922
Submitter:
JCVI
Date:
2016/06/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001673345.1 (latest)
RefSeq assembly accession:
GCF_001673345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LZLR01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
no
Genome coverage:
65.06x
Sequencing technology:
Illumina NextSeq 500

IDs: 761841 [UID] 3312848 [GenBank] 3321258 [RefSeq]

See Genome Information for Mycobacterium asiaticum

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/10/2016 16:17:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,573
CDS (total)::5,520
Genes (coding)::5,211
CDS (coding)::5,211
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::309
Pseudo Genes (ambiguous residues)::0 of 309
Pseudo Genes (frameshifted)::31 of 309
Pseudo Genes (incomplete)::275 of 309
Pseudo Genes (internal stop)::9 of 309
Pseudo Genes (multiple problems)::6 of 309
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,910,140
Total ungapped length5,910,140
Number of contigs248
Contig N5054,212
Contig L5036
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)248

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,910,1402485,910,14054,21200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium asiaticumMycobacterium asiaticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000613245.1Mycobacterium asiaticum DSM 44297type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000613245.1Mycobacterium asiaticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type92.1590.6090.60
Best-match type92.1590.6090.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna